List of probes and primers

122 probes found.

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Probe name Full name (Alm et al.) Category Target rRNA Specificity FISH Primer
Fibr225 S-G-Fibr-0225-a-A-21 animal and human associated microbiota, intestinal microbiota 16S Fibrobacter ✔ ✘
Bif1278 S-G-Bif-1278-a-A-17 animal and human associated microbiota, intestinal microbiota 16S Bifidobacterium spp. ✘ ✘
LSPotu11021-1127 S-*-Lsp-1127-a-A-20 animal and human associated microbiota, intestinal microbiota 16S Lachnospiraceae OTU_11021 ✔ ✘
Bif164 S-G-Bif-0164-a-A-18 animal and human associated microbiota, intestinal microbiota 16S Bifidobacterium spp. ✘ ✘
Bif662 S-G-Bif-0662-a-A-18 animal and human associated microbiota, intestinal microbiota 16S Bifidobacterium spp. ✘ ✘
Clept1240 S-G-Clept-1240-a-A-18 animal and human associated microbiota, intestinal microbiota 16S Clostridium leptum ✘ ✘
gam1-1246 — animal and human associated microbiota, intestinal microbiota 16S “Candidatus Gilliamella apicola” or Gamma-1 (symbiotic Gammaproteobacteria phylotype in honey bee) ✔ ✘
LM3 S-G-Bif-1412-a-A-21 animal and human associated microbiota, intestinal microbiota 16S Bifidobacterium genus ✘ ✘
E.bar1237 S-S-E.bar-1237-a-A-18 animal and human associated microbiota, intestinal microbiota 16S Eubacterium barkeri ✔ ✘
E.bif462 S-S-E.bif-0462-a-A-18 animal and human associated microbiota, intestinal microbiota 16S Eubacterium biforme ✔ ✘
E.con1122 S-S-E.con-1122-a-A-20 animal and human associated microbiota, intestinal microbiota 16S Eubacterium contortum ✔ ✘
E.cyl461 S-St-E.cyl-0461-a-A-18 animal and human associated microbiota, intestinal microbiota 16S Eubacterium cylindroides ✔ ✘
E.cyl466 S-St-E.cyl-0466-a-A-18- animal and human associated microbiota, intestinal microbiota 16S Eubacterium cylindroides ✔ ✘
E.dol183 S-S-E.dol-0183-a-A-18 animal and human associated microbiota, intestinal microbiota 16S Eubacterium dolichum ✔ ✘
E.had579 S-S-E.had-0579-a-A-20 animal and human associated microbiota, intestinal microbiota 16S Eubacterium hadrum (Anaerostipes hadrus) ✔ ✘
E.len194 S-S-E.len-0194-a-A-18 animal and human associated microbiota, intestinal microbiota 16S Eubacterium lentum ✔ ✘
E.lim1433 S-S-E.lim-1433-a-A-18 animal and human associated microbiota, intestinal microbiota 16S Eubacterium limosum E. callanderi ✔ ✘
E.mon84 S-S-E.mon-0084-a-A-18 animal and human associated microbiota, intestinal microbiota 16S Eubacterium moniliforme ✔ ✘
E.ven66 S-S-E.ven-0066-a-A-18 animal and human associated microbiota, intestinal microbiota 16S Eubacterium ventriosum ✔ ✘
Acac194 S-S-Acac-0194-a-A-18 animal and human associated microbiota, intestinal microbiota 16S Anaerostipes caccae ✘ ✘
Rint1102 S-S-Rint-1102-a-A-18 animal and human associated microbiota, intestinal microbiota 16S Roseburia intestinalis, human gut isolates L1-952, L1-93, L1-8151, L1-810, and L1-82 ✘ ✘
Ehal578 S-*-Ehal-0578-a-A-18 animal and human associated microbiota, intestinal microbiota 16S Eubacterium hallii, E. hallii L2-7 ✘ ✘
Fpra655 S-*-Fpra-0655-a-A-18 animal and human associated microbiota, intestinal microbiota 16S Faecalibacterium prausnitzii A2-165 and L2-6 ✘ ✘
Rint623 S-*-Rint-0623-a-A-18 animal and human associated microbiota, intestinal microbiota 16S Roseburia cecicola, Roseburia intestinalis, human gut isolates L1-81, L1-83, L1-8151, L1-82, L1-952, L1-810, L1-93, A2-194, and A1-86, bacterium clones adhufec8, adhufec225, adhufec150, and adhufec75.25 rumen clones 4C28d-8, 4C3d-14, and 3C3d-8 ✘ ✘
Emul183 S-S-Emul-0183-a-A-18 animal and human associated microbiota, intestinal microbiota 16S Eubacterium multiforme ✘ ✘