List of probes and primers

198 probes found.

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Probe name Full name (Alm et al.) Category Target rRNA Specificity FISH Primer
Bete-1419 S-*-Bete-1419-a-A-18 bacteria of relevance in wastewater treatment 16S some unclassified Bacteroidetes ✔ ✘
Chro-1137 S-*-Chro-1137-a-A-18 bacteria of relevance in wastewater treatment 16S some Chromatiales ✔ ✘
Caul-1262 S-*-Caul-1262-a-A-18 bacteria of relevance in wastewater treatment 16S some Caulobacterales ✔ ✘
Ubac-1430 S-*-Ubac-1430-a-A-18 bacteria of relevance in wastewater treatment 16S some unclassified Bacteria ✔ ✘
Ubac-1241 S-*-Ubac-1241-a-A-18 bacteria of relevance in wastewater treatment 16S some unclassified Bacteria ✔ ✘
uBet-0984 S-*-uBet-0984-a-A-18 bacteria of relevance in wastewater treatment 16S some unclassified Betaproteobacteria ✔ ✘
Ubet-0834 S-*-Ubet-0834-a-A-18 bacteria of relevance in wastewater treatment 16S some unclassified Betaproteobacteria ✔ ✘
Ubet-0990 S-*-Ubet-0990-a-A-21 bacteria of relevance in wastewater treatment 16S some unclassified Betaproteobacteria ✔ ✘
Rhoc-0998 S-*-Rhoc-0998-a-A-18 bacteria of relevance in wastewater treatment 16S some Rhodocyclaceae ✔ ✘
Rhoc-1425 S-*-Rhoc-1425-a-A-18 bacteria of relevance in wastewater treatment 16S some unclassified Rhodocyclaceae ✔ ✘
Thio-1032 S-*-Thio-1032-a-A-18 bacteria of relevance in wastewater treatment 16S some Thiobacillus and some unclassified Betaproteobacteria ✔ ✘
DEN67 — denitrifying (nitrate-reducing) bacteria, bacteria of relevance in wastewater treatment 16S Methanol-utilizing denitrifying cluster ✔ ✘
DEN124 — denitrifying (nitrate-reducing) bacteria, bacteria of relevance in wastewater treatment 16S Acetate-denitrifying cluster ✔ ✘
DEN581 — denitrifying (nitrate-reducing) bacteria, bacteria of relevance in wastewater treatment 16S Acetate-denitrifying cluster ✔ ✘
CteA S-S-Cte-0462-a-A-20 bacteria of relevance in wastewater treatment 16S Comamonas testosteroni ✔ ✘
Nm143-446-1 — ammonia-oxidizing bacteria, bacteria of relevance in wastewater treatment 16S Nitrosomonas sp. Nm143-related clones ✔ ✘
Nm143-446-2 — ammonia-oxidizing bacteria, bacteria of relevance in wastewater treatment 16S Nitrosomonas sp. Nm143-related clones ✔ ✘
Nspmar62 — nitrite-oxidizing bacteria, bacteria of relevance in wastewater treatment 16S Nitrospira marina-related clones ✔ ✘
Nmar831 — ammonia-oxidizing bacteria, bacteria of relevance in wastewater treatment 16S Nitrosomonas marina-related clones ✔ ✘
Nost993 S-*-Nost-993-a-A-18 bacteria of relevance in wastewater treatment 16S Filamentous Alphaproteobacteria ✔ ✘
PPx1002 S-*-PPx-1002-a-A-18 bacteria of relevance in wastewater treatment 16S Filamentous Alphaproteobacteria ✔ ✘
EU25-1238 S-*-EU25-1238-a-A-20 bacteria of relevance in wastewater treatment 16S Filamentous Chloroflexi ✔ ✘
Bfu613 — anaerobic ammonium-oxidizing bacteria, bacteria of relevance in wastewater treatment 16S Candidatus “Brocadia fulgida” ✔ ✘