List of probes and primers

198 probes found.

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Probe name Full name (Alm et al.) Category Target rRNA Specificity FISH Primer
LDI — bacteria of relevance in wastewater treatment 16S Leptothrix discophora ✔ ✘
SNA — bacteria of relevance in wastewater treatment 16S Sphaerotilus natans ✔ ✘
PAO462 — bacteria of relevance in wastewater treatment 16S Candidatus Accumulibacter phosphatis ✔ ✘
Rc988 — bacteria of relevance in wastewater treatment 16S Rhodocyclus spp., Candidatus Accumulibacter phosphatis, and related bacteria ✘ ✘
ALBO577 — bacteria of medical or hygienical relevance, bacteria of relevance in wastewater treatment 16S Alcaligenes, Bordetella and close relatives ✔ ✘
Myc657 S-*-Myc-0657-a-A-16 bacteria of relevance in wastewater treatment 16S Mycobacterium subdivision (mycolic acid-containing actinomycetes) ✔ ✘
Ntcoc206 S-*-Ntcoc-206-a-A-18 nitrite-oxidizing bacteria, bacteria of relevance in wastewater treatment 16S Nitrococcus mobilis ✘ ✘
Ntspn994 S-*-Ntspn-994-a-A-18 nitrite-oxidizing bacteria, bacteria of relevance in wastewater treatment 16S Nitrospina gracilis ✘ ✘
Nscry1004 S-*-Nscry-1004-a-A-19 ammonia-oxidizing bacteria, bacteria of relevance in wastewater treatment 16S Nitrosomonas cryotolerans ✔ ✘
Nscoc65 S-*-Nscoc-65-a-A-18 ammonia-oxidizing bacteria, bacteria of relevance in wastewater treatment 16S Nitrosococcus oceani, Nitrosococcus halophilus ✔ ✘
Nscoc1248 S-*-Nscoc-1248-a-A-18 ammonia-oxidizing bacteria, bacteria of relevance in wastewater treatment 16S Nitrosococcus oceani, Nitrosococcus halophilus ✔ ✘
Sca1309 S-G-Sca-1309-a-A-21 bacteria of relevance in wastewater treatment, anaerobic ammonium-oxidizing bacteria 16S genus Candidatus Scalindua ✔ ✘
Scabr1114 S-*-Scabr-1114-a-A-22 bacteria of relevance in wastewater treatment, anaerobic ammonium-oxidizing bacteria 16S Candidatus Scalidua brodae ✔ ✘
Amx368 S-*-Amx-0368-a-A-18 bacteria of relevance in wastewater treatment, anaerobic ammonium-oxidizing bacteria 16S all ANAMMOX bacteria ✔ ✘
BS820 S-*-BS-820-a-A-22 bacteria of relevance in wastewater treatment, anaerobic ammonium-oxidizing bacteria 16S Candidatus Scalidua wagneri, Candidatus Scalidua sorokinii ✔ ✘
NSMR76 — bacteria of relevance in wastewater treatment, ammonia-oxidizing bacteria 16S Nitrosomonas marina-like ammonia-oxidizing bacteria ✔ ✘
NSMR34 — bacteria of relevance in wastewater treatment, ammonia-oxidizing bacteria 16S Nitrosospira tenius-like ammonia-oxidizing bacteria ✔ ✘
Nmo218 — bacteria of relevance in wastewater treatment, ammonia-oxidizing bacteria 16S Nitrosomonas oligotropha-lineage ✔ ✘
NITROSO4E — bacteria of relevance in wastewater treatment, ammonia-oxidizing bacteria 16S Betaproteobacterial ammonia-oxidizing bacteria ✘ ✘
GB — bacteria of relevance in wastewater treatment 16S novel gammaproteobacterial group ✔ ✘
GB_G1 (GAOQ989) — bacteria of relevance in wastewater treatment 16S novel gammaproteobacterial group ✔ ✘
GB_G2 — bacteria of relevance in wastewater treatment 16S novel gammaproteobacterial group ✔ ✘
GB_1 and 2 — bacteria of relevance in wastewater treatment 16S novel gammaproteobacterial group ✘ ✘
GB_2 — bacteria of relevance in wastewater treatment 16S novel gammaproteobacterial group ✘ ✘
GB_3 — bacteria of relevance in wastewater treatment 16S novel gammaproteobacterial group ✘ ✘