List of probes and primers

198 probes found.

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Probe name Full name (Alm et al.) Category Target rRNA Specificity FISH Primer
A33-587 S-*-A33-0587-a-A-18 bacteria of relevance in wastewater treatment 16S activated sludge clone A33 ✘ ✘
ZOGLO828 S-*-Zoglo-0828-a-A-18 bacteria of relevance in wastewater treatment 16S Zoogloea spp. ✘ ✘
ZOGLO455 S-*-Zoglo-0455-a-A-18 bacteria of relevance in wastewater treatment 16S Some members of the Zoogloea lineage (activated sludge clones H13, H11, H22, H10, H40, H27, and S21), not Z. ramigera and Z. resiniphila ✘ ✘
ZORAM211 S-*-Zo.ram-0211-a-A-18 bacteria of relevance in wastewater treatment 16S Zoogloea ramigera ✘ ✘
ZORAM441 S-*-Zo.ram-0441-a-A-18 bacteria of relevance in wastewater treatment 16S Zoogloea ramigera ✘ ✘
RHAC855 S-*-RhAc-0855-a-A-18 bacteria of relevance in wastewater treatment, phototrophic bacteria 16S Rhodocyclus spp., most members of the Candidatus Accumulibacter cluster ✘ ✘
ACCBA443 S-*-Accba-0443-a-A-18 bacteria of relevance in wastewater treatment 16S Some members of the Candidatus Accumulibacter cluster ✘ ✘
STEBA468 S-*-Steba-0468-a-A-18 bacteria of relevance in wastewater treatment 16S Some members of the Sterolibacterium lineage (activated sludge clones S28, A13, S40, H12, H23, and H20) ✘ ✘
STEBA635 S-*-Steba-0635-a-A-18 bacteria of relevance in wastewater treatment 16S Few members of the Sterolibacterium lineage (activated sludge clones S28 and A13) ✘ ✘
STEBA643 S-*-Steba-0643-a-A-18 bacteria of relevance in wastewater treatment 16S Few members of the Sterolibacterium lineage (activated sludge clones S40, H12, H23, and H20) ✘ ✘
STEBA214 S-*-Steba-0214-a-A-18 bacteria of relevance in wastewater treatment 16S Few members of the Sterolibacterium lineage (clones SBR1001, SBR2080, and GC24) ✘ ✘
QUACO135 S-*-Quaco-0135-a-A-18 bacteria of relevance in wastewater treatment 16S Quadricoccus australiensis, reactor clone PHOS-HE23 ✘ ✘
BTWO663 S-*-Btwo-0663-a-A-18 bacteria of relevance in wastewater treatment 16S most Rhodocyclales, but not the Rhodocyclales environmental cluster 1, Zoogloea spp., and Dechlorosoma-Azospira cluster ✘ ✘
TH3 (AZTHA222,RHC222) S-*-RHC-0222-a-A-18 bacteria of relevance in wastewater treatment, dinitrogen-fixing bacteria 16S Some members of the Azoarcus-Thauera-Denitromonas, Zoogloea, and Azovibrio lineages ✘ ✘
TH14 (RHC175b) S-*-RHC-0175-b-A-18 bacteria of relevance in wastewater treatment, dinitrogen-fixing bacteria 16S Some Thauera, Azoarcus, Zoogloea, Sterolibacterium, and Azovibrio spp. ✘ ✘
ATDe467 S-*-ATDe-0467-a-A-18 bacteria of relevance in wastewater treatment 16S Activated sludge clones A33, H25, H30, H35, S3, S10, and S23 of the Azoarcus-Thauera-Denitromonas lineage ✘ ✘
ZOGLO1416 S-G-Zoglo-1416-a-A-18 bacteria of relevance in wastewater treatment 16S Zoogloea spp. ✘ ✘
ACCBA651 S-*-Accba-0651-a-A-18 bacteria of relevance in wastewater treatment 16S most bacteria of the Candidatus Accumulibacter phosphatis cluster ✘ ✘
ACCBA455 S-*-Accba-0455-a-A-18 bacteria of relevance in wastewater treatment 16S Some members of the Candidatus Accumulibacter cluster ✘ ✘
ACCBA846 S-*-Accba-846-a-A-18 bacteria of relevance in wastewater treatment 16S Most members of the Candidatus Accumulibacter cluster ✘ ✘
STEBA448 S-*-Steba-0448-a-A-18 bacteria of relevance in wastewater treatment 16S Some members of the Sterolibacterium lineage (activated sludge clones S28, A13, S40, H12, H23, and H20) ✘ ✘
HHY — bacteria of relevance in wastewater treatment 16S Haliscomenobacter hydrossis ✔ ✘
TNI — bacteria of relevance in wastewater treatment 16S Thiothrix nivea ✔ ✘
LMU — bacteria of relevance in wastewater treatment 16S Leucothrix mucor ✔ ✘
21N — bacteria of relevance in wastewater treatment 16S Eikelboom type 021N strain II-26 ✔ ✘