List of probes and primers

103 probes found.

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Probe name Full name (Alm et al.) Category Target rRNA Specificity FISH Primer
EURY514 — higher taxonomic levels 16S most Euryarchaeota ✔ ✘
U519 — higher taxonomic levels 16S all known 18S-like rRNA sequences ✘ ✘
ARM980 — higher taxonomic levels 16S novel AMD euryarchaeota ✘ ✘
cWTF915 — higher taxonomic levels 16S AMD nanoarchaeal lineage ✘ ✘
APL637 — higher taxonomic levels 16S Aplasma, acid mine drainage Thermoplasmatales ✔ ✘
GPL642 — higher taxonomic levels 16S Gplasma, acid mine drainage Thermoplasmatales ✔ ✘
TPL759 — higher taxonomic levels 16S Tplasma, Thermoplasma spp. ✔ ✘
BPL830 — higher taxonomic levels 16S Bplasma, acid mine drainage Thermoplasmatales ✔ ✘
EPL623 — higher taxonomic levels 16S Eplasma, acid mine drainage Thermoplasmatales ✘ ✘
GAM42a_T1038_G1031 — higher taxonomic levels 23S Representatives of the Xanthomonas group ✔ ✘
GAM42a_T1038 — higher taxonomic levels 23S Representatives of the Xanthomonas group ✔ ✘
GAM42a_A1041_A1040 — higher taxonomic levels 23S Representatives of the Xanthomonas group and the Alphaproteobacteria, Brevundimonas diminuta ✔ ✘
Cren537 — higher taxonomic levels 16S Crenarchaea ✔ ✘
Eury806 — higher taxonomic levels 16S Euryarchaea ✔ ✘
Univ907 S-*-Univ-0907-a-A-18 higher taxonomic levels 16S all organism ✘ ✘
Eub927 S-D-Eub-0927-a-A-18 higher taxonomic levels 16S most Bacteria ✘ ✘
EPSY549 S-C-eProt-0549-a-A-18 higher taxonomic levels 16S Epsilonproteobacteria ✔ ✘
EPSY914 S-C-eProt-0914-a-A-18 higher taxonomic levels 16S Epsilonproteobacteria ✘ ✘
EPSY1384 S-C-eProt-1384-a-A-18 higher taxonomic levels 16S Epsilonproteobacteria ✘ ✘
AERO1244 S-G-Aero-1244-a-A-21 higher taxonomic levels 16S Aeromonadaceae ✔ ✘
HGC236 — higher taxonomic levels 16S Actinobacteria ✘ ✘
MYBM1171 S-G-Mybm-1171-a-A-18 higher taxonomic levels 16S genus Methylobacterium ✘ ✘
E11 — higher taxonomic levels 16S Eubacteria ✔ ✘
Beta1 — higher taxonomic levels 16S Betaproteobacteria ✘ ✘
Beta2 — higher taxonomic levels 16S Betaproteobacteria ✘ ✘