List of probes and primers

103 probes found.

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Probe name Full name (Alm et al.) Category Target rRNA Specificity FISH Primer
HGC69A (HGC) L-P-Grps-1901-a-A-18 higher taxonomic levels 23S Actinobacteria (high G+C Gram-positive bacteria) ✔ ✘
HoAc1402 S-*-HoAc-1402-a-A-18 bacteria of relevance in wastewater treatment, higher taxonomic levels 16S Acidobacteria, activated sludge clones A22, A34, H3, H44, S6 ✔ ✘
IRog1 — higher taxonomic levels 16S phylum Acidobacteria group a ✘ ✘
IRog2 — higher taxonomic levels 16S phylum Acidobacteria group a ✘ ✘
LGC354A — higher taxonomic levels 16S Firmicutes (Gram-positive bacteria with low G+C content) ✔ ✘
LGC354B — higher taxonomic levels 16S Firmicutes (Gram-positive bacteria with low G+C content) ✔ ✘
LGC354C — higher taxonomic levels 16S Firmicutes (Gram-positive bacteria with low G+C content) ✔ ✘
Ntspa712 S-*-Ntspa-712-a-A-21 higher taxonomic levels, nitrite-oxidizing bacteria 16S most members of the phylum Nitrospirae ✔ ✘
OTU25to31-1406 S-*-OTU25to31-1406-a-A-18 bacteria of relevance in wastewater treatment, higher taxonomic levels 16S some Anaerolineae ✔ ✘
OTU43/44-360 S-*-OTU43/44-0360-a-A-18 bacteria of relevance in wastewater treatment, higher taxonomic levels 16S Acidobacteria group a, activated sludge clones A22, A34, H3 ✔ ✘
PLA46 S-P-Planc-0046-a-A-18 higher taxonomic levels 16S Planctomycetales ✔ ✘
PLA886 S-P-Planc-0886-a-A-19 higher taxonomic levels 16S Planctomycetes ✔ ✘
Ttoga660 S-*-Ttoga-0660-a-A-18 higher taxonomic levels, iron- and manganese-reducing bacteria 16S Thermotogales ✔ ✘
UNIV1390 S-*-Univ-1390-a-A-18 higher taxonomic levels 16S all Organisms ✔ ✘
UNIVER — higher taxonomic levels 16S all Bacteria ✘ ✘
PF2 — higher taxonomic levels, eukaryotes 18S all yeasts ✔ ✘
UNIV1389a S-D-Univ-1389-a-A-18 higher taxonomic levels 16S Bacteria, not Epsilonproteobacteria ✘ ✘
UNIV1389b S-D-Univ-1389-b-A-18 higher taxonomic levels, eukaryotes 18S Eucarya ✘ ✘
UNIV1389c S-D-Univ-1389-c-A-18 higher taxonomic levels 16S Archaea ✘ ✘
ARCH917 S-D-Arch-0917-a-A-18 higher taxonomic levels 16S Archaea ✘ ✘
DELTA495a S-C-dProt-0495-a-A-18 higher taxonomic levels, sulfate-reducing microbes 16S Most Deltaproteobacteria and most Gemmatimonadetes ✔ ✘
DELTA495b S-*-dProt-0495-b-A-18 higher taxonomic levels, sulfate-reducing microbes 16S some Deltaproteobacteria ✔ ✘
DELTA495c S-*-dProt-0495-c-A-18 higher taxonomic levels, sulfate-reducing microbes 16S some Deltaproteobacteria ✔ ✘
NTSPA714 S-*-Ntspa-714-a-A-18 higher taxonomic levels, nitrite-oxidizing bacteria 16S Phylum Nitrospira, not Thermodesulfovibrio islandicus ✘ ✘
TDSBM1282 S-P-Tdsbm-1282-a-A-18 sulfate-reducing microbes, higher taxonomic levels, iron- and manganese-reducing bacteria 16S Thermodesulfobacterium spp., Geothermobacterium sp. ✘ ✘