List of probes and primers

187 probes found.

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Probe name Full name (Alm et al.) Category Target rRNA Specificity FISH Primer
DSV1154 — sulfate-reducing microbes 16S Desulfovibrio alcoholivorans, D. fructosivorans, D. burkinensis, rice field isolate F1-7b and R-SucA1 ✘ ✘
DSV1292 S-*-Dsv-1292-a-A-18 sulfate-reducing microbes 16S Some Desulfovibrio and Bilophila wadsworthia ✔ ✘
DSV214 — sulfate-reducing microbes 16S Most Desulfomicrobium ✔ ✘
DSV407 — sulfate-reducing microbes 16S Few Desulfovibrionaceae, Desulfohalobiaceae, and Desulfonatronumaceae ✔ ✘
Dsv683 S-*-Dsv-0683-a-A-22 sulfate-reducing microbes 16S Desulfovibrionaceae, metal reducers ✘ ✘
687(DSV687) S-F-Dsv-0687-a-A-16 sulfate-reducing microbes, iron- and manganese-reducing bacteria 16S Most Desulfovibrionales (excluding Lawsonia) and many Desulfuromonales ✔ ✘
DSV698 — sulfate-reducing microbes 16S Some Desulfovibrio, Bilophila wadsworthia, and Lawsonia intracellularis ✔ ✘
Dtm(a)229 S-*-Dtm(a)-0229-a-A-18 sulfate-reducing microbes 16S Desulfotomaculum cluster Ia ✘ ✘
Dtm(bcd)230 S-*-Dtm(bcd)-0230-a-A-18 sulfate-reducing microbes 16S Many Desulfotomaculum cluster I and other Firmicutes ✔ ✘
Dtm(be)152 S-*-Dtm(be)-0152-a-A-20 sulfate-reducing microbes 16S Desulfotomaculum cluster Ib and Ie ✘ ✘
Dtm(c)428 S-*-Dtm(c)-0428-a-A-19 sulfate-reducing microbes 16S Desulfotomaculum cluster Ic ✘ ✘
Dtm(cd)216 S-*-Dtm(cd)-0216-a-A-19 sulfate-reducing microbes 16S Desulfotomaculum cluster Ic and Id ✘ ✘
Dtm229 S-G-Dtm-0229-a-A-18 sulfate-reducing microbes 16S Desulfotomaculum cluster I and other Firmicutes ✔ ✘
SRB385 (SRB) S-*-Srb-0385-a-A-18 sulfate-reducing microbes 16S Most Desulfovibrionales and other Bacteria ✔ ✘
SRB385Db — sulfate-reducing microbes 16S Desulfobacterales, Desulfuromonales, Syntrophobacterales, Myxococcales, and other Bacteria ✔ ✘
Sval428 — sulfate-reducing microbes 16S Some Desulfobulbaceae (excluding most Desulfobulbus ✔ ✘
SYN835 — sulfate-reducing microbes, syntrophic microbes 16S Syntrophobacter, Desulforhabdus ✘ ✘
DSM194 S-G-Dsm-0194-a-A-18 sulfate-reducing microbes 16S Desulfomicrobium spp., Desulfobacterium macestii ✘ ✘
DSM213 S-G-Dsm-0213-a-A-18 sulfate-reducing microbes 16S Desulfomicrobium ✔ ✘
DSHRE830 S-S-Dsh.re-0830-a-A-18 sulfate-reducing microbes 16S Desulfohalobium retbaense ✘ ✘
DSHRE995 S-S-Dsh.re-0995-a-A-18 sulfate-reducing microbes 16S Desulfohalobium retbaense ✘ ✘
DSHRE1243 S-S-Dsh.re-1243-a-A-18 sulfate-reducing microbes 16S Desulfohalobium retbaense ✘ ✘
DFMI227a S-*-DfmI-0227-a-A-18 sulfate-reducing microbes 16S Desulfotomaculum putei, Dfm. gibsoniae, Dfm. geothermicum, Dfm. thermosapovorans, Dfm. thermoacidovorans, Dfm. thermobenzoicum, Dfm. thermoacetoxidans, Dfm. australicum, Dfm. kuznetsovii, Dfm. thermocisternum, Dfm. luciae, Sporotomaculum hydroxybenzoicum ✘ ✘
DFMI227b S-*-DfmI-0227-b-A-18 sulfate-reducing microbes 16S Desulfotomaculum aeronauticum, Dfm. nigrificans, Dfm. reducens, Dfm. ruminis, Dfm. sapomandens, Dfm. halophilum ✘ ✘
DFMI210 S-*-DfmI-0210-a-A-18 sulfate-reducing microbes 16S some Desulfotomaculum spp. of clusters Ic and Id ✘ ✘